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Chapter Two - The Pseudomonas aeruginosa whole genome sequence: A 20th anniversary celebration.

Authors :
Brinkman, Fiona S. L.
Winsor, Geoffrey L.
Done, Rachel E.
Filloux, Alain
Francis, Vanessa I.
Goldberg, Joanna B.
Greenberg, E. Peter
Han, Kook
Hancock, Robert E. W.
Haney, Cara H.
Häußler, Susanne
Klockgether, Jens
Lamont, Iain L.
Levesque, Roger C.
Lory, Stephen
Nikel, Pablo I.
Porter, Steven L.
Scurlock, Matthew W.
Schweizer, Herbert P.
Tümmler, Burkhard
Source :
Advances in Microbial Physiology; 2021, Vol. 79, p25-88, 64p
Publication Year :
2021

Abstract

Toward the end of August 2000, the 6.3 Mbp whole genome sequence of Pseudomonas aeruginosa strain PAO1 was published. With 5570 open reading frames (ORFs), PAO1 had the largest microbial genome sequenced up to that point in time--including a large proportion of metabolic, transport and antimicrobial resistance genes supporting its ability to colonize diverse environments. A remarkable 9% of its ORFs were predicted to encode proteins with regulatory functions, providing new insight into bacterial network complexity as a function of network size. In this celebratory article, we fast forward 20 years, and examine how access to this resource has transformed our understanding of P. aeruginosa. What follows is more than a simple review or commentary; we have specifically asked some of the leaders in the field to provide personal reflections on how the PAO1 genome sequence, along with the Pseudomonas Community Annotation Project (PseudoCAP) and Pseudomonas Genome Database (pseudomonas.com), have contributed to the many exciting discoveries in this field. In addition to bringing us all up to date with the latest developments, we also ask our contributors to speculate on how the next 20 years of Pseudomonas research might pan out. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
00652911
Volume :
79
Database :
Supplemental Index
Journal :
Advances in Microbial Physiology
Publication Type :
Academic Journal
Accession number :
175738512
Full Text :
https://doi.org/10.1016/bs.ampbs.2021.07.001