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Development of a Nasonia vitripennis outbred laboratory population for genetic analysis.
- Source :
- Molecular Ecology Resources; May2014, Vol. 14 Issue 3, p578-587, 10p
- Publication Year :
- 2014
-
Abstract
- The parasitoid wasp genus Nasonia has rapidly become a genetic model system for developmental and evolutionary biology. The release of its genome sequence led to the development of high-resolution genomic tools, for both interspecific and intraspecific research, which has resulted in great advances in understanding Nasonia biology. To further advance the utility of Nasonia vitripennis as a genetic model system and to be able to fully exploit the advantages of its fully sequenced and annotated genome, we developed a genetically variable and well-characterized experimental population. In this study, we describe the establishment of the genetically diverse HVRx laboratory population from strains collected from the field in the Netherlands. We established a maintenance method that retains genetic variation over generations of culturing in the laboratory. As a characterization of its genetic composition, we provide data on the standing genetic variation and estimate the effective population size ( N<subscript>e</subscript>) by microsatellite analysis. A genome-wide description of polymorphism is provided through pooled resequencing, which yielded 417 331 high-quality SNPs spanning all five Nasonia chromosomes. The HVRx population and its characterization are freely available as a community resource for investigators seeking to elucidate the genetic basis of complex trait variation using the Nasonia model system. [ABSTRACT FROM AUTHOR]
Details
- Language :
- English
- ISSN :
- 1755098X
- Volume :
- 14
- Issue :
- 3
- Database :
- Complementary Index
- Journal :
- Molecular Ecology Resources
- Publication Type :
- Academic Journal
- Accession number :
- 95561631
- Full Text :
- https://doi.org/10.1111/1755-0998.12201