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Development of a Nasonia vitripennis outbred laboratory population for genetic analysis.

Authors :
Zande, Louis
Ferber, Steven
Haan, Ammerins
Beukeboom, Leo W.
Heerwaarden, Joost
Pannebakker, Bart A.
Source :
Molecular Ecology Resources; May2014, Vol. 14 Issue 3, p578-587, 10p
Publication Year :
2014

Abstract

The parasitoid wasp genus Nasonia has rapidly become a genetic model system for developmental and evolutionary biology. The release of its genome sequence led to the development of high-resolution genomic tools, for both interspecific and intraspecific research, which has resulted in great advances in understanding Nasonia biology. To further advance the utility of Nasonia vitripennis as a genetic model system and to be able to fully exploit the advantages of its fully sequenced and annotated genome, we developed a genetically variable and well-characterized experimental population. In this study, we describe the establishment of the genetically diverse HVRx laboratory population from strains collected from the field in the Netherlands. We established a maintenance method that retains genetic variation over generations of culturing in the laboratory. As a characterization of its genetic composition, we provide data on the standing genetic variation and estimate the effective population size ( N<subscript>e</subscript>) by microsatellite analysis. A genome-wide description of polymorphism is provided through pooled resequencing, which yielded 417 331 high-quality SNPs spanning all five Nasonia chromosomes. The HVRx population and its characterization are freely available as a community resource for investigators seeking to elucidate the genetic basis of complex trait variation using the Nasonia model system. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
1755098X
Volume :
14
Issue :
3
Database :
Complementary Index
Journal :
Molecular Ecology Resources
Publication Type :
Academic Journal
Accession number :
95561631
Full Text :
https://doi.org/10.1111/1755-0998.12201