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A Deterministic DNA Database Search.

Authors :
Kheniche, A.
Salhi, A.
Harrison, A.
Dowden, J. M.
Source :
Advances in Computational Biology; 2011, p371-378, 8p
Publication Year :
2011

Abstract

This paper suggests a novel way for measuring the similarity between sequences of symbols from alphabets of small cardinality such as DNA and RNA sequences. The approach relies on finding one-to-one mappings between these sequences and a subset of the real numbers. Gaps in nonidentical sequences are easily detected. Computational illustrations on DNA sequences and a comparison with BLAST are included. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISBNs :
9781441959126
Database :
Complementary Index
Journal :
Advances in Computational Biology
Publication Type :
Book
Accession number :
76828523
Full Text :
https://doi.org/10.1007/978-1-4419-5913-3_42