Order-preserving principles underlying genotype-phenotype maps ensure high additive proportions of genetic variance.

In quantitative genetics, the degree of resemblance between parents and offspring is described in terms of the additive variance ( V_A) relative to genetic ( V_G) and phenotypic ( V_P) variance. For populations with extreme allele frequencies, high V_A/ V_G can be explained without considering properties of the genotype-phenotype (GP) map. We show that randomly generated GP maps in populations with intermediate allele frequencies generate far lower V_A/ V_G values than empirically observed. The main reason is that order-breaking behaviour is ubiquitous in random GP maps. Rearrangement of genotypic values to introduce order-preservation for one or more loci causes a dramatic increase in V_A/ V_G. This suggests the existence of order-preserving design principles in the regulatory machinery underlying GP maps. We illustrate this feature by showing how the ubiquitously observed monotonicity of dose-response relationships gives much higher V_A/ V_G values than a unimodal dose-response relationship in simple gene network models. [ABSTRACT FROM AUTHOR]