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PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.

Authors :
Watson-Haigh, Nathan S.
Kadarmideen, Haja N.
Reverter, Antonio
Source :
Bioinformatics; Feb2010, Vol. 26 Issue 3, p411-413, 3p, 1 Diagram, 1 Graph
Publication Year :
2010

Abstract

Summary: We make the PCIT algorithm, used for detecting meaningful gene–gene associations in co-expression networks, available as an R package. Automatic detection of a suitable parallel environment is used such that scripts are portable between parallel and non-parallel environments with no modification of the script. [ABSTRACT FROM PUBLISHER]

Details

Language :
English
ISSN :
13674803
Volume :
26
Issue :
3
Database :
Complementary Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
47988508
Full Text :
https://doi.org/10.1093/bioinformatics/btp674