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The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries.

Authors :
Istrail, Sorin
Pevzner, Pavel
Waterman, Michael S.
Giancarlo, Raffaele
Hannenhalli, Sridhar
Chin, Francis Y. L.
Leung, Henry C. M.
Sung, W. K.
Yiu, S. M.
Source :
Algorithms in Bioinformatics (9783540741251); 2007, p372-382, 11p
Publication Year :
2007

Abstract

In this paper, we study the adaptive version of the point placement problem on a line, which is motivated by a DNA mapping problem. To identify the relative positions of n distinct points on a straight line, we are allowed to ask queries of pairwise distances of the points in rounds. The problem is to find the number of queries required to determine a unique solution for the positions of the points up to translation and reflection. We improved the bounds for several cases. We show that $4n/3 + O(\sqrt{n})$ queries are sufficient for the case of two rounds while the best known result was 3n/2 queries. For unlimited number of rounds, the best result was 4n/3 queries. We obtain a much better result of using $5n/4 + O(\sqrt{n})$ queries with three rounds only. We also improved the lower bound of 30n/29 to 17n/16 for the case of two rounds. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISBNs :
9783540741251
Database :
Complementary Index
Journal :
Algorithms in Bioinformatics (9783540741251)
Publication Type :
Book
Accession number :
33290262
Full Text :
https://doi.org/10.1007/978-3-540-74126-8_35