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Bridging the gap between thermodynamic integration and umbrella sampling provides a novel analysis method: “Umbrella integration”.

Authors :
Kästner, Johannes
Thiel, Walter
Source :
Journal of Chemical Physics; 10/8/2005, Vol. 123 Issue 14, p144104, 5p, 5 Graphs
Publication Year :
2005

Abstract

We present a method to analyze biased molecular-dynamics and Monte Carlo simulations, also known as umbrella sampling. In the limiting case of a strong bias, this method is equivalent to thermodynamic integration. It employs only quantities with easily controllable equilibration and greatly reduces the statistical errors compared to the standard weighted histogram analysis method. We show the success of our approach for two examples, one analytic function, and one biological system. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
00219606
Volume :
123
Issue :
14
Database :
Complementary Index
Journal :
Journal of Chemical Physics
Publication Type :
Academic Journal
Accession number :
18616958
Full Text :
https://doi.org/10.1063/1.2052648