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Damsel: analysis and visualisation of DamID sequencing in R.
- Source :
- Bioinformatics; Dec2024, Vol. 40 Issue 12, p1-5, 5p
- Publication Year :
- 2024
-
Abstract
- Summary DamID sequencing is a technique to map the genome-wide interaction of a protein with DNA. Damsel is the first Bioconductor package to provide an end to end analysis for DamID sequencing data within R. Damsel performs quantification and testing of significant binding sites along with exploratory and visual analysis. Damsel produces results consistent with previous analysis approaches. Availability and implementation The R package Damsel is available for install through the Bioconductor project https://bioconductor.org/packages/release/bioc/html/Damsel.html and the code is available on GitHub https://github.com/Oshlack/Damsel/. [ABSTRACT FROM AUTHOR]
- Subjects :
- PROTEIN-protein interactions
BINDING sites
SEQUENCE analysis
DNA
Subjects
Details
- Language :
- English
- ISSN :
- 13674803
- Volume :
- 40
- Issue :
- 12
- Database :
- Complementary Index
- Journal :
- Bioinformatics
- Publication Type :
- Academic Journal
- Accession number :
- 181928737
- Full Text :
- https://doi.org/10.1093/bioinformatics/btae695