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Damsel: analysis and visualisation of DamID sequencing in R.

Authors :
Page, Caitlin G
Londsdale, Andrew
Mitchell, Katrina A
Schröder, Jan
Harvey, Kieran F
Oshlack, Alicia
Source :
Bioinformatics; Dec2024, Vol. 40 Issue 12, p1-5, 5p
Publication Year :
2024

Abstract

Summary DamID sequencing is a technique to map the genome-wide interaction of a protein with DNA. Damsel is the first Bioconductor package to provide an end to end analysis for DamID sequencing data within R. Damsel performs quantification and testing of significant binding sites along with exploratory and visual analysis. Damsel produces results consistent with previous analysis approaches. Availability and implementation The R package Damsel is available for install through the Bioconductor project https://bioconductor.org/packages/release/bioc/html/Damsel.html and the code is available on GitHub https://github.com/Oshlack/Damsel/. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13674803
Volume :
40
Issue :
12
Database :
Complementary Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
181928737
Full Text :
https://doi.org/10.1093/bioinformatics/btae695