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From primers to pipettes: An immersive course introducing high school students to qPCR for quantifying chemical defense gene expression.

Authors :
Spooner, Zeke T.
Encerrado‐Manriquez, Angela M.
Truong, Tina T.
Nicklisch, Sascha C. T.
Source :
Biochemistry & Molecular Biology Education; Nov2024, Vol. 52 Issue 6, p633-647, 15p
Publication Year :
2024

Abstract

We created a 2‐week, dual‐module summer course introducing high school students to environmental toxicology by teaching them quantitative polymerase chain reaction (qPCR) as a way to quantify gene expression of chemical defense proteins in response to exposure to environmental pollutants. During the course, students are guided through the various stages of a successful qPCR experiment: in silico primer design and quality control, total RNA extraction and isolation, cDNA conversion, primer test PCR, and evaluation of results via agarose gel electrophoresis or UV/Vis spectra. The course combines lectures, discussions, and demonstrations with dry and wet laboratory sections to give students a thorough understanding of the scope, utility, and chemical principles of qPCR. At the end of the course, the students are taught how to analyze qPCR data and are encouraged to discuss their findings with other classmates to evaluate their hypotheses and assess possible sources of error. This course was designed to be easily adaptable to multiple test species, chemical exposures, and genes of interest. To explore both terrestrial and aquatic toxicology, the students use honey bees (Apis mellifera) and mosquitofish (Gambusia affinis) as test organisms, as well as ABC‐type efflux transporters, antioxidant enzymes, and cytochrome P450 enzymes as endpoints for assessing gene expression. We share this course setup and applied protocols to encourage others to design and offer similar courses that give high school students a hands‐on introduction to a broad swath of environmental toxicology research and an opportunity to develop scientific skills necessary for university‐level research. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
14708175
Volume :
52
Issue :
6
Database :
Complementary Index
Journal :
Biochemistry & Molecular Biology Education
Publication Type :
Academic Journal
Accession number :
180925675
Full Text :
https://doi.org/10.1002/bmb.21851