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Ferroptosis‐Related Genes in IgA Nephropathy: Screening for Potential Targets of the Mechanism.

Authors :
Zhu, Wenhui
Chen, Yao
Xiao, Jing
Cheng, Chuchu
Ma, Guijie
Wang, Yang
Zhang, Yonggang
Chen, Ming
Mohammadi, Saeed
Source :
International Journal of Genomics; 8/14/2024, Vol. 2024, p1-22, 22p
Publication Year :
2024

Abstract

Aims: Exploring key genes and potential molecular pathways of ferroptosis in immunoglobulin A nephropathy (IgAN). Methods: The IgAN datasets and ferroptosis‐related genes (FRGs) were obtained in the Gene Expression Omnibus (GEO) and FerrDb database. Differentially expressed genes (DEGs) were identified using R software and intersected with FRGs to obtain differentially expressed FRGs (DE‐FRGs). After that, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis (PEA) and Gene Ontology (GO) functional annotation were performed on DE‐FRGs. In the Search Tool for the Retrieval of Interacting Genes (STRING) website, we construct a protein–protein interaction (PPI) network. The PPI network was further investigated with screening hub genes with Cytoscape software. The core genes were then subjected to gene set enrichment analysis (GSEA). Finally, the samples were analyzed for immune infiltration in R, and the correlation between hub genes and immune cells was analyzed. Results: A total of 347 DEGs were identified. CD44, CDO1, CYBB, IL1B, RRM2, AKR1C1, activated transcription factor‐3 (ATF3), CDKN1A, GDF15, JUN, MGST1, MIOX, MT1G, NR4A1, PDK4, TNFAIP3, and ZFP36 were determined as DE‐FRGs. JUN, IL1B, and ATF3 were then screened as hub genes. GSEA and immune infiltration analysis revealed that the hub genes were closely associated with immune inflammatory responses such as NOD‐like receptor signaling, IL‐17 signaling, and TNF signaling. Conclusions: Our results show that JUN and ATF3 are possibly critical genes in the process of IgAN ferroptosis and may be related with immune cell infiltration. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
2314436X
Volume :
2024
Database :
Complementary Index
Journal :
International Journal of Genomics
Publication Type :
Academic Journal
Accession number :
179674285
Full Text :
https://doi.org/10.1155/2024/8851124