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Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae).

Authors :
Chen, Bao-Zheng
Yang, Zi-Jiang
Wang, Wei-Bin
Hao, Ting-Ting
Yu, Peng-Ban
Dong, Yang
Yu, Wen-Bin
Source :
Scientific Data; 8/13/2024, Vol. 11 Issue 1, p1-11, 11p
Publication Year :
2024

Abstract

Flueggea virosa (Roxb. ex Willd.) Royle, an evergreen shrub and small tree in the Phyllanthaceae family, holds significant potential in garden landscaping and pharmacological applications. However, the lack of genomic data has hindered further scientific understanding of its horticultural and medicinal values. In this study, we have assembled a haplotype-resolved genome of F. virosa for the first time. The two haploid genomes, named haplotype A genome and haplotype B genome, are 487.33 Mb and 477.53 Mb in size, respectively, with contig N50 lengths of 31.45 Mb and 32.81 Mb. More than 99% of the assembled sequences were anchored to 13 pairs of pseudo-chromosomes. Furthermore, 21,587 and 21,533 protein-coding genes were predicted in haplotype A and haplotype B genomes, respectively. The availability of this chromosome-level genome fills the gap in genomic data for F. virosa and provides valuable resources for molecular studies of this species, supporting future research on speciation, functional genomics, and comparative genomics within the Phyllanthaceae family. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
20524463
Volume :
11
Issue :
1
Database :
Complementary Index
Journal :
Scientific Data
Publication Type :
Academic Journal
Accession number :
179041831
Full Text :
https://doi.org/10.1038/s41597-024-03681-7