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The changing landscape of text mining: a review of approaches for ecology and evolution.

Authors :
Farrell, Maxwell J.
Le Guillarme, Nicolas
Brierley, Liam
Hunter, Bronwen
Scheepens, Daan
Willoughby, Anna
Yates, Andrew
Mideo, Nicole
Source :
Proceedings of the Royal Society B: Biological Sciences; 7/17/2024, Vol. 291 Issue 2027, p1-12, 12p
Publication Year :
2024

Abstract

In ecology and evolutionary biology, the synthesis and modelling of data from published literature are commonly used to generate insights and test theories across systems. However, the tasks of searching, screening, and extracting data from literature are often arduous. Researchers may manually process hundreds to thousands of articles for systematic reviews, meta-analyses, and compiling synthetic datasets. As relevant articles expand to tens or hundreds of thousands, computer-based approaches can increase the efficiency, transparency and reproducibility of literature-based research. Methods available for text mining are rapidly changing owing to developments in machine learning-based language models. We review the growing landscape of approaches, mapping them onto three broad paradigms (frequency-based approaches, traditional Natural Language Processing and deep learning-based language models). This serves as an entry point to learn foundational and cutting-edge concepts, vocabularies, and methods to foster integration of these tools into ecological and evolutionary research. We cover approaches for modelling ecological texts, generating training data, developing custom models and interacting with large language models and discuss challenges and possible solutions to implementing these methods in ecology and evolution. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
09628452
Volume :
291
Issue :
2027
Database :
Complementary Index
Journal :
Proceedings of the Royal Society B: Biological Sciences
Publication Type :
Academic Journal
Accession number :
178977155
Full Text :
https://doi.org/10.1098/rspb.2024.0423