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A high-quality chromosome-level genome assembly of the endangered tree Kmeria septentrionalis.

Authors :
Shi, Chen-Yu
Qin, Guo-Le
Qin, Ying-Can
Lu, Lin-Yuan
Guan, De-Long
Gao, Li-Xia
Source :
Scientific Data; 7/13/2024, Vol. 11 Issue 1, p1-9, 9p
Publication Year :
2024

Abstract

Kmeria septentrionalis is a critically endangered tree endemic to Guangxi, China, and is listed on the International Union for Conservation of Nature's Red List. The lack of genetic information and high-quality genome data has hindered conservation efforts and studies on this species. In this study, we present a chromosome-level genome assembly of K. septentrionalis. The genome was initially assembled to be 2.57 Gb, with a contig N50 of 11.93 Mb. Hi-C guided genome assembly allowed us to anchor 98.83% of the total length of the initial contigs onto 19 pseudochromosomes, resulting in a scaffold N50 of 135.08 Mb. The final chromosome-level genome, spaning 2.54 Gb, achieved a BUSCO completeness of 98.9% and contained 1.67 Gb repetitive elements and 35,927 coding genes. This high-quality genome assembly provides a valuable resource for understanding the genetic basis of conservation-related traits and biological properties of this endangered tree species. Furthermore, it lays a critical foundation for evolutionary studies within the Magnoliaceae family. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
20524463
Volume :
11
Issue :
1
Database :
Complementary Index
Journal :
Scientific Data
Publication Type :
Academic Journal
Accession number :
178416173
Full Text :
https://doi.org/10.1038/s41597-024-03617-1