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Machine Learning Approach to Predict AXL Kinase Inhibitor Activity for Cancer Drug Discovery Using Bayesian Optimization-XGBoost.

Authors :
Noviandy, Teuku Rizky
Idroes, Ghalieb Mutig
Hardi, Irsan
Source :
Journal of Soft Computing & Data Mining (JSCDM); 2024, Vol. 5 Issue 1, p46-56, 11p
Publication Year :
2024

Abstract

This study aims to predict AXL kinase inhibitors utilizing a Bayesian Optimization-XGBoost machine learning model. A dataset comprising 1074 compounds with IC50 values was collected from the ChEMBL database and molecular descriptors for each compound were calculated. The Bayesian Optimization-XGBoost model demonstrated superior performance in predicting AXL kinase inhibitors, achieving an accuracy of 86.24%, precision of 89.52%, recall of 89.52%, and an F1-score of 89.52%, outperforming other models such as LightGBM, Logistic Regression, k-Nearest Neighbors (KNN), Support Vector Machine (SVM), and Naïve Bayes. This study underlines the importance of advanced machine learning techniques, particularly Bayesian Optimization-XGBoost, in predicting AXL kinase inhibitors, offering a promising approach for accelerating the early stages of drug discovery. Despite its success, the model's performance depends on the diversity and quality of the training data, and future work should focus on expanding the dataset and validating results with experimental studies. This computational method has the potential to streamline the drug development pipeline and contribute to the discovery of more effective cancer treatments. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
2716621X
Volume :
5
Issue :
1
Database :
Complementary Index
Journal :
Journal of Soft Computing & Data Mining (JSCDM)
Publication Type :
Academic Journal
Accession number :
178380389
Full Text :
https://doi.org/10.30880/jscdm.2024.05.01.004