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High-quality genome assembly and annotation of five bacteria isolated from the Abu Dhabi sabkha-shore region.

Authors :
Sarfraz, Beenish
Tuyisabe, Jean
De Montfort, Louis
Ibrahim, Abdulrahman
Abdulkreem Almansoori, Shamma Z.
Alajami, Haya
Almeqbaali, Asma
Kundu, Biduth
Nath, Vishnu Sukumari
Saeed, Esam Eldin
Mishra, Ajay Kumar
Hazzouri, Khaled Michel
Almaskari, Raja
Sharma, Abhishek Kumar
Sudalaimuthuasari, Naganeeswaran
Amiri, Khaled M. A.
Source :
BMC Genomic Data; 6/19/2024, Vol. 25 Issue 1, p1-4, 4p
Publication Year :
2024

Abstract

Objectives: Sabkhas represent polyextreme environments characterized by elevated salinity levels, intense ultraviolet (UV) radiation exposure, and extreme temperature fluctuations. In this study, we present the complete genomes of five bacterial isolates isolated from the sabkha-shore region and investigate their genomic organization and gene annotations. A better understanding of the bacterial genomic organization and genetic adaptations of these bacteria holds promise for engineering microbes with tailored functionalities for diverse industrial and agricultural applications, including bioremediation and promotion of plant growth under salinity stress conditions. Data description: We present a comprehensive genome sequencing and annotation of five bacteria (kcgeb_sa, kcgeb_sc, kcgeb_sd, kcgeb_S4, and kcgeb_S11) obtained from the shores of the Abu Dhabi Sabkha region. Initial bacterial identification was conducted through 16 S rDNA amplification and sequencing. Employing a hybrid genome assembly technique combining Illumina short reads (NovaSeq 6000) and Oxford Nanopore long reads (MinION), we obtained complete annotated high-quality gap-free genome sequences. The genome sizes of the kcgeb_sa, kcgeb_sc, kcgeb_sd, kcgeb_S4, and kcgeb_S11 isolates were determined to be 2.4 Mb, 4.1 Mb, 2.9 Mb, 5.05 Mb, and 4.1 Mb, respectively. Our analysis conclusively assigned the bacterial isolates as Staphylococcus capitis (kcgeb_sa), Bacillus spizizenii (kcgeb_sc and kcgeb_S11), Pelagerythrobacter marensis (kcgeb_sd), and Priestia aryabhattai (kcgeb_S4). [ABSTRACT FROM AUTHOR]

Details

Language :
English
Volume :
25
Issue :
1
Database :
Complementary Index
Journal :
BMC Genomic Data
Publication Type :
Academic Journal
Accession number :
177993408
Full Text :
https://doi.org/10.1186/s12863-024-01246-6