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MASH‐Ocean 1.0: Interactive platform for investigating microbial diversity, function, and biogeography with marine metagenomic data.

Authors :
Wang, Yinzhao
Li, Liuyang
Li, Qiang
Hu, Yaoxun
Li, Wenjie
Wu, Zhile
Huang, Hungchia
Lv, Zhenbo
Liu, Wan
Cao, Ruifang
Zhao, Guoping
Wang, Fengping
Zhang, Guoqing
Source :
iMeta; Jun2024, Vol. 3 Issue 3, p1-8, 8p
Publication Year :
2024

Abstract

The article discusses the development of MASH-Ocean 1.0, an interactive platform that allows researchers to investigate microbial diversity, function, and biogeography using marine metagenomic data. The platform integrates global marine metagenomic data and provides various analysis modules for researchers studying hydrosphere ecosystems. These modules include diversity analysis, function analysis, biogeography analysis, and interaction network analysis. The platform allows users to visualize taxonomic composition, metabolic functional pathways, global distribution patterns of microbial species and genes, and microbial co-occurrence networks. The platform aims to provide a comprehensive and convenient service for researchers working with omics data from hydrosphere ecosystems. [Extracted from the article]

Details

Language :
English
ISSN :
27705986
Volume :
3
Issue :
3
Database :
Complementary Index
Journal :
iMeta
Publication Type :
Academic Journal
Accession number :
177945793
Full Text :
https://doi.org/10.1002/imt2.201