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Multi-omic integrated curvature study on pan-cancer genomic data.

Authors :
Zhu, Jiening
Tran, Anh Phong
Deasy, Joseph O.
Tannenbaum, Allen
Source :
Mathematics of Control, Signals & Systems; Mar2024, Vol. 36 Issue 1, p101-120, 20p
Publication Year :
2024

Abstract

In this work, we introduce a new mathematical framework based on network curvature to extract significant cancer subtypes from multi-omics data. This extends our previous work that was based on analyzing a fixed single-omics data class (e.g., CNA, gene expression, methylation, etc.). Notably, we are able to show that this new methodology provided us with significant survival differences on Kaplan–Meier curves across almost every cancer considered. Moreover, the variances in Ollivier–Ricci curvature were explored to investigate its usefulness in network geometry analysis as this curvature has the potential to capture subtle functional changes between various cancer subtypes. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
09324194
Volume :
36
Issue :
1
Database :
Complementary Index
Journal :
Mathematics of Control, Signals & Systems
Publication Type :
Academic Journal
Accession number :
175895987
Full Text :
https://doi.org/10.1007/s00498-023-00360-7