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Complete chloroplast genome of a traditional medicinal plant Luisia hancockii Rolfe 1896: genomic features and phylogenetic relationship within subtribe Aeridinae (Orchidaceae).
- Source :
- Mitochondrial DNA: Resources; 2023, Vol. 8 Issue 11, p1149-1153, 5p
- Publication Year :
- 2023
-
Abstract
- Luisia hancockii Rolfe 1896 is an epiphytic orchid species. In our present study, the whole chloroplast genome sequence of L. hancockii was de novo assembled by using high-throughput Illumina reads, and phylogenetic analysis was conducted within species of subtribe Aeridinae. The complete chloroplast genome sequence of L. hancockii was 146,243 bp in length, with a typical quadripartite structure, and its large single-copy, small single-copy, and inverted repeat were 84,441 bp, 11,412 bp, and 25,195 bp long, respectively. The GC content of the whole chloroplast genome was 36.6%, while the GC contents of LSC, SSC, and IR were 33.8%, 27.5%, and 43.3%, respectively. The chloroplast genome consisted of 129 genes, including 74 protein-coding genes, eight rRNAs, 38 tRNAs, and nine pseudogenes. Phylogenic tree was generated using the best model GTR + R, and the results showed that L. hancockii was sister to Holcoglossum and Vanda species, with a support of 100%. [ABSTRACT FROM AUTHOR]
Details
- Language :
- English
- ISSN :
- 23802359
- Volume :
- 8
- Issue :
- 11
- Database :
- Complementary Index
- Journal :
- Mitochondrial DNA: Resources
- Publication Type :
- Academic Journal
- Accession number :
- 174682375
- Full Text :
- https://doi.org/10.1080/23802359.2023.2275334