Back to Search Start Over

Genomic attributes and characterization of novel exopolysaccharide-producing bacterium Halomonas piscis sp. nov. isolated from jeotgal.

Authors :
Bora Kim
Ah-In Yang
Hae-In Joe
Ki Hyun Kim
Hanna Choe
Sung-Hong Joe
Min Ok Jun
Na-Ri Shin
Source :
Frontiers in Microbiology; 2023, p1-11, 11p
Publication Year :
2023

Abstract

Halophilic bacterial strains, designated SG2L-4<superscript>T</superscript>, SB1M4, and SB2L-5, were isolated from jeotgal, a traditional Korean fermented food. Cells are Gram-stain-negative, aerobic, non-motile, rod-shaped, catalase-positive, and oxidase-negative. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain SG2L-4<superscript>T</superscript> is closely related to Halomonas garicola KACC 18117<superscript>T</superscript> with a similarity of 96.2%. The complete genome sequence of strain SG2L-4<superscript>T</superscript> was 3,227,066  bp in size, with a genomic G  +  C content of 63.3  mol%. The average nucleotide identity and digital DNA–DNA hybridization values between strain SG2L-4<superscript>T</superscript> and H. garicola KACC 18117<superscript>T </superscript> were 90.5 and 40.7%, respectively. The optimal growth conditions for strain SG2L-4<superscript>T</superscript> were temperatures between 30 and 37°C, a pH value of 7, and the presence of 10% (w/v) NaCl. The polar lipids identified included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unknown phospholipid, an unknown glycolipid, and an unknown polar lipid. The major cellular fatty acids were C<subscript>16:0</subscript>, summed features 8 (C<subscript>18:1</subscript> ω6c and/or C<subscript>18:1</subscript> ω7c), C<subscript>19:0 </subscript>cyclo ω8c, and summed features 3 (C<subscript>16:1</subscript> ω6c and/or C<subscript>16:1</subscript> ω7c). The predominant respiratory quinone was ubiquinone with nine isoprene units (Q-9). Based on the phenotypic, genotypic, and chemotaxonomic results, strain SG2L-4<superscript>T</superscript> represents a novel species within the genus Halomonas, for which the name Halomonas piscis sp. nov. is proposed. The type strain is SG2L-4<superscript>T</superscript> (=KCTC 92842<superscript>T</superscript>   =  JCM 35929<superscript>T</superscript> ). Functional annotation of the genome of strain SG2L4<superscript>T</superscript> confirmed the presence of exopolysaccharide synthesis protein (ExoD) and capsular polysaccharide-related genes. Strain SG2L-4<superscript>T</superscript> also exhibited positive results in Molisch’s test, indicating the presence of extracellular carbohydrates and exopolysaccharides (EPS) production. These findings provide valuable insights into the EPS-producing capabilities of H. piscis sp. nov. isolated from jeotgal, contributing to understanding its potential roles in food and biotechnological applications. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
1664302X
Database :
Complementary Index
Journal :
Frontiers in Microbiology
Publication Type :
Academic Journal
Accession number :
174516588
Full Text :
https://doi.org/10.3389/fmicb.2023.1303039