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A dynamic web resource for robust and reproducible genomics in nonmodel species: marineomics.io.

Authors :
Bogan, Samuel N.
Johns, Jason
Griffiths, Joanna S.
Davenport, Danielle
Smith, Sara J.
Schaal, Sara M.
Downey‐Wall, Alan
Lou, Runyang Nicolas
Lotterhos, Katie
Guidry, Megan E.
Rivera, Hanny E.
McGirr, Joseph A.
Puritz, Jonathan B.
Roberts, Steven B.
Silliman, Katherine
Source :
Methods in Ecology & Evolution; Nov2023, Vol. 14 Issue 11, p2709-2716, 8p
Publication Year :
2023

Abstract

Genomic methods are becoming increasingly valuable and established in ecological research, particularly in nonmodel species. Supporting their progress and adoption requires investment in resources that promote (i) reproducibility of genomic analyses, (ii) accessibility of learning tools and (iii) keeping pace with rapidly developing methods and principles.We introduce marineomics.io, an open‐source, living document to disseminate tutorials, reproducibility tools and best principles for ecological genomic research in marine and nonmodel systems.The website's existing content spans population and functional genomics, including current recommendations for whole‐genome sequencing, RAD‐seq, Pool‐seq and RNA‐seq. With the goal to facilitate the development of new, similar resources, we describe our process for aggregating and synthesizing methodological principles from the ecological genomics community to inform website content. We also detail steps for authorship and submission of new website content, as well as protocols for providing feedback and topic requests from the community.These web resources were constructed with guidance for doing rigorous, reproducible science. Collaboration and contributions to the website are encouraged from scientists of all skill sets and levels of expertise. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
2041210X
Volume :
14
Issue :
11
Database :
Complementary Index
Journal :
Methods in Ecology & Evolution
Publication Type :
Academic Journal
Accession number :
173369147
Full Text :
https://doi.org/10.1111/2041-210X.14219