Phylogeography and host‐shift speciation in the vampirecups, an enigmatic clade of endophytic holoparasitic plants.

Aim: Diversification of obligate parasites is often closely associated with historical shifts among host species. This phenomenon is well‐documented in animal parasites but still poorly understood for parasitic plants. We studied the associations between host shifts, biogeography and diversification in Cytinus, a genus of endophytic holoparasitic plants which show a remarkable disjunct distribution. Location: Mediterranean Basin, southern Africa, Madagascar. Taxon: Cytinus. Methods: We sampled numerous populations in South Africa and the western Mediterranean Basin, as well as a few populations in Madagascar where the genus is rare. We amplified two nuclear (ITS and SSU) and two mitochondrial (matR and nad1) loci, to infer its evolutionary history using maximum likelihood and time‐calibrated Bayesian analyses, to elucidate the factors responsible for its current distribution and to assess whether host switching is a main driver of speciation. Results: All genes recover lineages corresponding to the three geographic areas of Cytinus and sublineages associated with specific host plants, although they disagree on their deep‐level relationships. Ribosomal nuclear genes support an initial split of the Malagasy lineage and an Afrotropical origin of Cytinus before colonization of warm temperate latitudes. Mitochondrial genes support an initial split of the Mediterranean and Afro‐Malagasy lineages and a later split between the South African and Malagasy clades. Introgressive hybridization is the most likely explanation for this discrepancy, while horizontal gene transfers from hosts is less likely. We found strong support for cryptic host‐specific diversity, with five and eight host races in the Mediterranean and South Africa respectively, and a strong phylogenetic signal in the host–parasite associations suggestive of parasite diversification via phylogenetic host tracking. Main Conclusions: These dated phylogenies indicate that radiation through long‐distance dispersal events and adaptation to new hosts best explain the disjunct distribution of Cytinus. We emphasize the importance of host specificity and host‐switching in the diversification and biogeography of plant endoparasites. [ABSTRACT FROM AUTHOR]