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Metal-Involving Halogen Bonding Confirmed Using DFT Calculations with Periodic Boundary Conditions.

Authors :
Eliseeva, Anastasiya A.
Khazanova, Marina A.
Cheranyova, Anna M.
Aliyarova, Irina S.
Kravchuk, Roman I.
Oganesyan, Evfpraksiia S.
Ryabykh, Andrey V.
Maslova, Olga A.
Ivanov, Daniil M.
Beznosyuk, Serge A.
Source :
Crystals (2073-4352); May2023, Vol. 13 Issue 5, p712, 15p
Publication Year :
2023

Abstract

The cocrystallization of trans-[PtI<subscript>2</subscript>(NCN(CH<subscript>2</subscript>)<subscript>5</subscript>)<subscript>2</subscript>] and iodoform (CHI<subscript>3</subscript>) yields crystalline adduct trans-[PtI<subscript>2</subscript>(NCN(CH<subscript>2</subscript>)<subscript>5</subscript>)<subscript>2</subscript>]∙2CHI<subscript>3</subscript>, the structure of which was studied via single-crystal X-ray diffractometry (XRD). In the XRD structure of trans-[PtI<subscript>2</subscript>(NCN(CH<subscript>2</subscript>)<subscript>5</subscript>)<subscript>2</subscript>]∙2CHI<subscript>3</subscript>, apart from rather predictable C–H∙∙∙I hydrogen bonds (HBs) and C−I∙∙∙I halogen bonds (XBs) with the iodide ligands, we identified C–I∙∙∙Pt metal-involving XBs, where the platinum center functions as an XB acceptor (that includes a metal d<subscript>z</subscript><superscript>2</superscript>-orbital) toward the σ-holes of I atoms of CHI<subscript>3</subscript>. DFT calculations (PBE-D3/jorge-TZP-DKH with plane waves in the GAPW method) were carried out in the CP2K program for isolated molecules, complex–iodoform clusters, and crystal models with periodic boundary conditions, where the noncovalent nature and the existence of the interactions were confirmed using charge analysis, Wiberg bond indexes, and QTAIM topology analysis of electron density, whereas the philicities of the noncovalent partners were proved using charge analysis, electron localization function, electron density deformation, and one-electron potential projections, as well as electron density/electrostatic potential profiles for cluster models and electrostatic potential surfaces (ρ = 0.001 a.u.) for isolated molecules. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
20734352
Volume :
13
Issue :
5
Database :
Complementary Index
Journal :
Crystals (2073-4352)
Publication Type :
Academic Journal
Accession number :
163941332
Full Text :
https://doi.org/10.3390/cryst13050712