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WormBase single-cell tools.

Authors :
Beltrame, Eduardo da Veiga
Arnaboldi, Valerio
Sternberg, Paul W
Source :
Bioinformatics Advances; 2022, Vol. 2 Issue 1, p1-2, 2p
Publication Year :
2022

Abstract

We present two web apps for interactively performing common tasks with single-cell RNA sequencing data: scdefg for differential expression and wormcells-viz for visualization of gene expression. We deployed these tools with public Caenorhabditis elegans datasets curated by WormBase at https://single-cell.wormbase.org. Source code for deploying these tools with other datasets is available at https://github.com/WormBase/scdefg and https://github.com/WormBase/wormcells-viz. Supplementary information Supplementary data are available at Bioinformatics Advances online. [ABSTRACT FROM AUTHOR]

Details

Language :
English
Volume :
2
Issue :
1
Database :
Complementary Index
Journal :
Bioinformatics Advances
Publication Type :
Academic Journal
Accession number :
162786268
Full Text :
https://doi.org/10.1093/bioadv/vbac018