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Mechanism of Erzhiwan in treating osteoporosis based on molecular docking technology and molecular dynamics simulation.

Authors :
Li, Yanling
Li, Ziliang
Ye, Tongsheng
Hao, Fuqi
Wang, Yichi
Li, Wenqian
Yan, Qingfeng
Shi, Huawei
Han, Weijuan
Source :
Journal of Molecular Modeling; Jan2023, Vol. 29 Issue 1, p1-21, 21p
Publication Year :
2023

Abstract

This experiment was a network pharmacology research based on the theoretical system of traditional Chinese medicine. TCMSP database, PubChem database, RCSB database, and SwissTargetPrediction database were used to study the effective chemical constituents of Ligustri lucidi Fructus and Ecliptae Herba in Erzhiwan, a traditional prescription for nourishing the liver and kidney. Then Genecards database, OMIM database, OMIM Gene Map, and Metascape database were used to study the therapeutic targets of osteoporosis. At last, Cytoscape 3.6.0 software, its built-in Bisogenet and CytoNCA, AutoDockTools-1.5.6 software, PYMOL-2.2.0 software, and Gromacs software, by drawing the relationship diagram between chemical components and disease targets, PPI network of disease, semi-flexible molecular docking technology, evaluation and analysis of enrichment pathway, and molecular dynamics simulation, were used to study the therapeutic mechanism of Erzhiwan on osteoporosis. It is found that the intervention and regulation of Erzhiwan on osteoporosis were mainly realized through multiple targets of active ingredients and multiple pathways, which provided support for the continued development of Erzhiwan. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
16102940
Volume :
29
Issue :
1
Database :
Complementary Index
Journal :
Journal of Molecular Modeling
Publication Type :
Academic Journal
Accession number :
161396509
Full Text :
https://doi.org/10.1007/s00894-022-05418-y