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HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences.
- Source :
- Molecular Biology & Evolution; Aug2022, Vol. 39 Issue 8, p1-5, 5p
- Publication Year :
- 2022
-
Abstract
- HAlign is a cross-platform program that performs multiple sequence alignments based on the center star strategy. Here we present two major updates of HAlign 3, which helped improve the time efficiency and the alignment quality, and made HAlign 3 a specialized program to process ultra-large numbers of similar DNA/RNA sequences, such as closely related viral or prokaryotic genomes. HAlign 3 can be easily installed via the Anaconda and Java release package on macOS, Linux, Windows subsystem for Linux, and Windows systems, and the source code is available on GitHub (https://github.com/malabz/HAlign-3). [ABSTRACT FROM AUTHOR]
- Subjects :
- PROKARYOTIC genomes
SEQUENCE alignment
VIRAL genomes
DNA
SOURCE code
DNA polymerases
Subjects
Details
- Language :
- English
- ISSN :
- 07374038
- Volume :
- 39
- Issue :
- 8
- Database :
- Complementary Index
- Journal :
- Molecular Biology & Evolution
- Publication Type :
- Academic Journal
- Accession number :
- 158805367
- Full Text :
- https://doi.org/10.1093/molbev/msac166