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Cell types of origin of the cell-free transcriptome.

Authors :
Vorperian, Sevahn K.
Moufarrej, Mira N.
Tabula Sapiens Consortium
Overall Project Direction and Coordination
Jones, Robert C.
Karkanias, Jim
Krasnow, Mark
Pisco, Angela Oliveira
Quake, Stephen R.
Salzman, Julia
Yosef, Nir
Donor Recruitment
Bulthaup, Bryan
Brown, Phillip
Harper, William
Hemenez, Marisa
Ponnusamy, Ravikumar
Salehi, Ahmad
Sanagavarapu, Bhavani A.
Spallino, Eileen
Source :
Nature Biotechnology; Jun2022, Vol. 40 Issue 6, p855-861, 7p
Publication Year :
2022

Abstract

Cell-free RNA from liquid biopsies can be analyzed to determine disease tissue of origin. We extend this concept to identify cell types of origin using the Tabula Sapiens transcriptomic cell atlas as well as individual tissue transcriptomic cell atlases in combination with the Human Protein Atlas RNA consensus dataset. We define cell type signature scores, which allow the inference of cell types that contribute to cell-free RNA for a variety of diseases. Cell types affected by various diseases are inferred from cell-free RNA. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
10870156
Volume :
40
Issue :
6
Database :
Complementary Index
Journal :
Nature Biotechnology
Publication Type :
Academic Journal
Accession number :
157463222
Full Text :
https://doi.org/10.1038/s41587-021-01188-9