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Comment on "Flexibility of short DNA helices with finite-length effect: From base pairs to tens of base pairs" [J. Chem. Phys. 142, 125103 (2015)].
- Source :
- Journal of Chemical Physics; 7/14/2021, Vol. 155 Issue 2, p1-3, 3p
- Publication Year :
- 2021
-
Abstract
- As expected, the asymptotic persistence lengths are the same in these two cases, as both converge toward the same HT <math display="inline" overflow="scroll" xmlns="http://www.w3.org/1998/Math/MathML"><msubsup><mrow> l </mrow><mrow><mtext>B,T</mtext></mrow><mrow> </mrow></msubsup></math> ht for large m. However, the I B i SB I i sb are determined by the boundary contributions of short segments (small m). This relation holds approximately for the values reported by Wu I et al. i :[1] HT <math display="inline" overflow="scroll" xmlns="http://www.w3.org/1998/Math/MathML"><msubsup><mrow> l </mrow><mrow> B </mrow><mrow> </mrow></msubsup><mo>=</mo><mn>50</mn></math> ht nm, I A i = 450 nm, and I B i = 10. Note that expression (2) contains one parameter less than (1), implying that HT <math display="inline" overflow="scroll" xmlns="http://www.w3.org/1998/Math/MathML"> A <mo>=</mo><msubsup><mrow> l </mrow><mrow> B </mrow><mrow> </mrow></msubsup> B </math> ht . [Extracted from the article]
- Subjects :
- DNA
MONTE Carlo method
BASE pairs
MOLECULAR dynamics
Subjects
Details
- Language :
- English
- ISSN :
- 00219606
- Volume :
- 155
- Issue :
- 2
- Database :
- Complementary Index
- Journal :
- Journal of Chemical Physics
- Publication Type :
- Academic Journal
- Accession number :
- 151399246
- Full Text :
- https://doi.org/10.1063/5.0055349