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FlywheelTools: Data Curation and Manipulation on the Flywheel Platform.
- Source :
- Frontiers in Neuroinformatics; 6/22/2021, Vol. 15, p1-10, 10p
- Publication Year :
- 2021
-
Abstract
- The recent and growing focus on reproducibility in neuroimaging studies has led many major academic centers to use cloud-based imaging databases for storing, analyzing, and sharing complex imaging data. Flywheel is one such database platform that offers easily accessible, large-scale data management, along with a framework for reproducible analyses through containerized pipelines. The Brain Imaging Data Structure (BIDS) is the de facto standard for neuroimaging data, but curating neuroimaging data into BIDS can be a challenging and time-consuming task. In particular, standard solutions for BIDS curation are limited on Flywheel. To address these challenges, we developed "FlywheelTools," a software toolbox for reproducible data curation and manipulation on Flywheel. FlywheelTools includes two elements: fw-heudiconv , for heuristic-driven curation of data into BIDS, and flaudit , which audits and inventories projects on Flywheel. Together, these tools accelerate reproducible neuroscience research on the widely used Flywheel platform. [ABSTRACT FROM AUTHOR]
- Subjects :
- DATA curation
FLYWHEELS
IMAGE databases
COLLEGE majors
DATA structures
Subjects
Details
- Language :
- English
- ISSN :
- 16625196
- Volume :
- 15
- Database :
- Complementary Index
- Journal :
- Frontiers in Neuroinformatics
- Publication Type :
- Academic Journal
- Accession number :
- 151059422
- Full Text :
- https://doi.org/10.3389/fninf.2021.678403