Back to Search Start Over

Genome sequencing unveils a regulatory landscape of platelet reactivity.

Authors :
Keramati, Ali R.
Chen, Ming-Huei
Rodriguez, Benjamin A. T.
Yanek, Lisa R.
Bhan, Arunoday
Gaynor, Brady J.
Ryan, Kathleen
Brody, Jennifer A.
Zhong, Xue
Wei, Qiang
NHLBI Trans-Omics for Precision (TOPMed) Consortium
Abe, Namiko
Abecasis, Goncalo
Aguet, Francois
Albert, Christine
Almasy, Laura
Alonso, Alvaro
Ament, Seth
Anderson, Peter
Anugu, Pramod
Source :
Nature Communications; 6/15/2021, Vol. 12 Issue 1, p1-13, 13p
Publication Year :
2021

Abstract

Platelet aggregation at the site of atherosclerotic vascular injury is the underlying pathophysiology of myocardial infarction and stroke. To build upon prior GWAS, here we report on 16 loci identified through a whole genome sequencing (WGS) approach in 3,855 NHLBI Trans-Omics for Precision Medicine (TOPMed) participants deeply phenotyped for platelet aggregation. We identify the RGS18 locus, which encodes a myeloerythroid lineage-specific regulator of G-protein signaling that co-localizes with expression quantitative trait loci (eQTL) signatures for RGS18 expression in platelets. Gene-based approaches implicate the SVEP1 gene, a known contributor of coronary artery disease risk. Sentinel variants at RGS18 and PEAR1 are associated with thrombosis risk and increased gastrointestinal bleeding risk, respectively. Our WGS findings add to previously identified GWAS loci, provide insights regarding the mechanism(s) by which genetics may influence cardiovascular disease risk, and underscore the importance of rare variant and regulatory approaches to identifying loci contributing to complex phenotypes. Platelet aggregation is associated with myocardial infarction and stroke. Here, the authors have conducted a whole genome sequencing association study on platelet aggregation, discovering a locus in RGS18, where enhancer assays suggest an effect on activity of haematopoeitic lineage transcription factors. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
20411723
Volume :
12
Issue :
1
Database :
Complementary Index
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
150934785
Full Text :
https://doi.org/10.1038/s41467-021-23470-9