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Prognostic power of a lipid metabolism gene panel for diffuse gliomas.

Authors :
Wu, Fan
Zhao, Zheng
Chai, Rui‐Chao
Liu, Yu‐Qing
Li, Guan‐Zhang
Jiang, Hao‐Yu
Jiang, Tao
Source :
Journal of Cellular & Molecular Medicine; Nov2019, Vol. 23 Issue 11, p7741-7748, 8p
Publication Year :
2019

Abstract

Lipid metabolism reprogramming plays important role in cell growth, proliferation, angiogenesis and invasion in cancers. However, the diverse lipid metabolism programmes and prognostic value during glioma progression remain unclear. Here, the lipid metabolism‐related genes were profiled using RNA sequencing data from The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) database. Gene ontology (GO) and gene set enrichment analysis (GSEA) found that glioblastoma (GBM) mainly exhibited enrichment of glycosphingolipid metabolic progress, whereas lower grade gliomas (LGGs) showed enrichment of phosphatidylinositol metabolic progress. According to the differential genes of lipid metabolism between LGG and GBM, we developed a nine‐gene set using Cox proportional hazards model with elastic net penalty, and the CGGA cohort was used for validation data set. Survival analysis revealed that the obtained gene set could differentiate the outcome of low‐ and high‐risk patients in both cohorts. Meanwhile, multivariate Cox regression analysis indicated that this signature was a significantly independent prognostic factor in diffuse gliomas. Gene ontology and GSEA showed that high‐risk cases were associated with phenotypes of cell division and immune response. Collectively, our findings provided a new sight on lipid metabolism in diffuse gliomas. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
15821838
Volume :
23
Issue :
11
Database :
Complementary Index
Journal :
Journal of Cellular & Molecular Medicine
Publication Type :
Academic Journal
Accession number :
139349338
Full Text :
https://doi.org/10.1111/jcmm.14647