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Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees.

Authors :
Chaves, Camila L.
Blanc-Jolivet, Celine
Sebbenn, Alexandre M.
Mader, Malte
Meyer-Sand, Barbara R. V.
Paredes-Villanueva, Kathelyn
Honorio Coronado, Euridice N.
Garcia-Davila, Carmen
Tysklind, Niklas
Troispoux, Valerie
Massot, Marie
Degen, Bernd
Source :
Conservation Genetics Resources; Sep2019, Vol. 11 Issue 3, p329-331, 3p
Publication Year :
2019

Abstract

We developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
18777252
Volume :
11
Issue :
3
Database :
Complementary Index
Journal :
Conservation Genetics Resources
Publication Type :
Academic Journal
Accession number :
138054940
Full Text :
https://doi.org/10.1007/s12686-018-1077-1