Back to Search Start Over

Sequanix: a dynamic graphical interface for Snakemake workflows.

Authors :
Desvillechabrol, Dimitri
Legendre, Rachel
Rioualen, Claire
Bouchier, Christiane
Helden, Jacques van
Kennedy, Sean
Cokelaer, Thomas
Source :
Bioinformatics; 6/1/2018, Vol. 34 Issue 11, p1934-1936, 3p
Publication Year :
2018

Abstract

Summary: We designed a PyQt graphical user interface--Sequanix--aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13674803
Volume :
34
Issue :
11
Database :
Complementary Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
130230303
Full Text :
https://doi.org/10.1093/bioinformatics/bty034