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The complete mitochondrial genome of <italic>Amphioctopus marginatus</italic> (Cephalopoda: Octopodidae) and the exploration for the optimal DNA barcoding in Octopodidae.

Authors :
Tang, Yan
Zheng, Xiaodong
Ma, Yuanyuan
Cheng, Rubin
Li, Qi
Source :
Conservation Genetics Resources; Mar2018, Vol. 10 Issue 1, p115-118, 4p
Publication Year :
2018

Abstract

In this study, the complete mitochondrial genome of &lt;italic&gt;Amphioctopus marginatus&lt;/italic&gt; (Cephalopoda: Octopodidae) was sequenced. The length of &lt;italic&gt;A. marginatus&lt;/italic&gt; was 15,719 base pairs (bp) and the composition of genome is A (41.74%), T (33.53%), C (16.77%), and G (7.96%). The whole mitogenome was composed of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and a major non-coding region. The overall A+T content of &lt;italic&gt;A. marginatus&lt;/italic&gt; showed remarkable similarity to other Octopodidae species reported before, with the characteristic of extremely richer than G+C. The gene order of the protein-coding genes was identical to other octopodids, but the tRNA genes were rearranged, making the gene order unique. The phylogenetic analysis showed relationships between &lt;italic&gt;A. marginatus&lt;/italic&gt; and &lt;italic&gt;Amphioctopus aegina&lt;/italic&gt; is close. The new mtDNA data enriched the database, which was beneficial to refine the phylogenetic relationships within Octopodidae further. ND5 gene could become an optimal DNA barcoding in taxon identification of the family. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
18777252
Volume :
10
Issue :
1
Database :
Complementary Index
Journal :
Conservation Genetics Resources
Publication Type :
Academic Journal
Accession number :
128333441
Full Text :
https://doi.org/10.1007/s12686-017-0777-2