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Damsel: analysis and visualisation of DamID sequencing in R.

Authors :
Page CG
Londsdale A
Mitchell KA
Schröder J
Harvey KF
Oshlack A
Source :
Bioinformatics (Oxford, England) [Bioinformatics] 2024 Nov 28; Vol. 40 (12).
Publication Year :
2024

Abstract

Summary: DamID sequencing is a technique to map the genome-wide interaction of a protein with DNA. Damsel is the first Bioconductor package to provide an end to end analysis for DamID sequencing data within R. Damsel performs quantification and testing of significant binding sites along with exploratory and visual analysis. Damsel produces results consistent with previous analysis approaches.<br />Availability and Implementation: The R package Damsel is available for install through the Bioconductor project https://bioconductor.org/packages/release/bioc/html/Damsel.html and the code is available on GitHub https://github.com/Oshlack/Damsel/.<br /> (© The Author(s) 2024. Published by Oxford University Press.)

Details

Language :
English
ISSN :
1367-4811
Volume :
40
Issue :
12
Database :
MEDLINE
Journal :
Bioinformatics (Oxford, England)
Publication Type :
Academic Journal
Accession number :
39558607
Full Text :
https://doi.org/10.1093/bioinformatics/btae695