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Insilico discovery of novel Phosphodiesterase 4 (PDE4) inhibitors for the treatment of psoriasis: Insights from computer aided drug design approaches.
- Source :
-
PloS one [PLoS One] 2024 Nov 13; Vol. 19 (11), pp. e0305934. Date of Electronic Publication: 2024 Nov 13 (Print Publication: 2024). - Publication Year :
- 2024
-
Abstract
- Psoriasis is chronic immune-mediated inflammatory disorder characterized by various comorbidities, erythematous plaques with silvery scale which can lead to psoriatic arthritis. The phosphodiesterase 4 (PDE4) protein is a potential drug target to control Psoriasis. In the current study, pharmacophore-based virtual screening of Diversity library of ChemDiv database was first performed, and then the screened hits were docked to the active site of PDE4 to choose the best binding modes. Forty-six hits generated during the virtual screening were prepared and docked to the PDE4 receptor by SP docking module of glide. The binding affinities of the selected hits were calculated by molecular docking and based on the affinities, ten hits were selected for the bioactivity scores prediction and ADMET analysis. Based on the ADMET profiling, four hits D356-2630, C700-2058, G842-0420 and F403-0203 were processed to MD simulations for stability analysis. The outcomes showed that these compounds showed strong binding with proteins with better binding free energies. Based on the results of our study, we proposed that these hits can function as lead in the biological assays and in vitro studies are required to develop the novel drug candidates.<br />Competing Interests: The authors have declared that no competing interests exist.<br /> (Copyright: © 2024 Alanzi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Subjects :
- Humans
Molecular Dynamics Simulation
Computer-Aided Design
Drug Discovery methods
Protein Binding
Catalytic Domain
Phosphodiesterase 4 Inhibitors chemistry
Phosphodiesterase 4 Inhibitors therapeutic use
Phosphodiesterase 4 Inhibitors pharmacology
Psoriasis drug therapy
Molecular Docking Simulation
Cyclic Nucleotide Phosphodiesterases, Type 4 metabolism
Cyclic Nucleotide Phosphodiesterases, Type 4 chemistry
Drug Design
Subjects
Details
- Language :
- English
- ISSN :
- 1932-6203
- Volume :
- 19
- Issue :
- 11
- Database :
- MEDLINE
- Journal :
- PloS one
- Publication Type :
- Academic Journal
- Accession number :
- 39535988
- Full Text :
- https://doi.org/10.1371/journal.pone.0305934