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Genome-Wide Identification and Bioinformatics Analysis of the FK506 Binding Protein Family in Rice.
- Source :
-
Genes [Genes (Basel)] 2024 Jul 10; Vol. 15 (7). Date of Electronic Publication: 2024 Jul 10. - Publication Year :
- 2024
-
Abstract
- The FK506 Binding Protein (FKBP), ubiquitously present across diverse species, is characterized by its evolutionarily conserved FK506 binding domain (FKBd). In plants, evidence suggests that this gene family plays integral roles in regulating growth, development, and responses to environmental stresses. Notably, research on the identification and functionality of FKBP genes in rice remains limited. Therefore, this study utilized bioinformatic tools to identify 30 FKBP -encoding genes in rice. It provides a detailed analysis of their chromosomal locations, evolutionary relationships with the Arabidopsis thaliana FKBP family, and gene structures. Further analysis of the promoter elements of these rice FKBP genes revealed a high presence of stress-responsive elements. Quantitative PCR assays under drought and heat stress conditions demonstrated that genes OsFKBP15-2 , OsFKBP15-3 , OsFKBP16-3 , OsFKBP18 , and OsFKBP42b are inducible by these adverse conditions. These findings suggest a significant role for the rice FKBP gene family in stress adaptation. This research establishes a critical foundation for deeper explorations of the functional roles of the OsFKBP genes in rice.
- Subjects :
- Stress, Physiological genetics
Genome, Plant
Multigene Family
Phylogeny
Evolution, Molecular
Promoter Regions, Genetic
Oryza genetics
Oryza metabolism
Tacrolimus Binding Proteins genetics
Tacrolimus Binding Proteins metabolism
Plant Proteins genetics
Plant Proteins metabolism
Computational Biology methods
Gene Expression Regulation, Plant
Subjects
Details
- Language :
- English
- ISSN :
- 2073-4425
- Volume :
- 15
- Issue :
- 7
- Database :
- MEDLINE
- Journal :
- Genes
- Publication Type :
- Academic Journal
- Accession number :
- 39062681
- Full Text :
- https://doi.org/10.3390/genes15070902