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Whole genome sequence data of 516 F 2 plants of tomato ( Solanum lycopersicum ).

Authors :
Lee TG
Source :
Data in brief [Data Brief] 2024 May 29; Vol. 55, pp. 110567. Date of Electronic Publication: 2024 May 29 (Print Publication: 2024).
Publication Year :
2024

Abstract

The large-fruited fresh-market tomato cultivated in the U.S. represents a unique fruit market class of contemporary (modern) tomatoes for direct consumption. The genomes of F <subscript>2</subscript> plants from crosses between inbred contemporary U.S. large-fruited fresh-market tomatoes were sequenced. 516 F <subscript>2</subscript> individual plants randomly selected from five different biparental segregating populations were used for DNA extraction. The polymerase chain reaction (PCR)-free, paired-end (2 × 150 bp) sequencing libraries (350 bp DNA fragment length) were prepared, and sequenced on average 5 Gb for each plant using the Illumina next-generation sequencing technologies [1,2]. Raw Illumina reads with adapter contamination and/or uncertain nucleotides constitute (Ns, >10 % of either read; Q-score 5 or lower, >50 % of either read) were removed. This data article will contribute to improving our knowledge of the genetic recombination and variation in tomato.<br /> (© 2024 The Author(s).)

Details

Language :
English
ISSN :
2352-3409
Volume :
55
Database :
MEDLINE
Journal :
Data in brief
Publication Type :
Academic Journal
Accession number :
38952950
Full Text :
https://doi.org/10.1016/j.dib.2024.110567