Back to Search
Start Over
Comparative Analysis of mRNA, microRNA of Transcriptome, and Proteomics on CIK Cells Responses to GCRV and Aeromonas hydrophila .
- Source :
-
International journal of molecular sciences [Int J Mol Sci] 2024 Jun 11; Vol. 25 (12). Date of Electronic Publication: 2024 Jun 11. - Publication Year :
- 2024
-
Abstract
- Grass Carp Reovirus (GCRV) and Aeromonas hydrophila (Ah) are the causative agents of haemorrhagic disease in grass carp. This study aimed to investigate the molecular mechanisms and immune responses at the miRNA, mRNA, and protein levels in grass carp kidney cells (CIK) infected by Grass Carp Reovirus (GCRV, NV) and Aeromonas hydrophilus (Bacteria, NB) to gain insight into their pathogenesis. Within 48 h of infection with Grass Carp Reovirus (GCRV), 99 differentially expressed microRNA (DEMs), 2132 differentially expressed genes (DEGs), and 627 differentially expressed proteins (DEPs) were identified by sequencing; a total of 92 DEMs, 3162 DEGs, and 712 DEPs were identified within 48 h of infection with Aeromonas hydrophila . It is worth noting that most of the DEGs in the NV group were primarily involved in cellular processes, while most of the DEGs in the NB group were associated with metabolic pathways based on KEGG enrichment analysis. This study revealed that the mechanism of a grass carp haemorrhage caused by GCRV infection differs from that caused by the Aeromonas hydrophila infection. An important miRNA-mRNA-protein regulatory network was established based on comprehensive transcriptome and proteome analysis. Furthermore, 14 DEGs and 6 DEMs were randomly selected for the verification of RNA/small RNA-seq data by RT-qPCR. Our study not only contributes to the understanding of the pathogenesis of grass carp CIK cells infected with GCRV and Aeromonas hydrophila, but also serves as a significant reference value for other aquatic animal haemorrhagic diseases.<br />Competing Interests: The authors declare no conflict of interest.
- Subjects :
- Animals
Proteomics methods
Fish Diseases microbiology
Fish Diseases immunology
Fish Diseases virology
Fish Diseases genetics
Gene Expression Profiling
Gram-Negative Bacterial Infections immunology
Gram-Negative Bacterial Infections veterinary
Gram-Negative Bacterial Infections microbiology
Gram-Negative Bacterial Infections genetics
Cell Line
Reoviridae Infections veterinary
Reoviridae Infections immunology
Reoviridae Infections genetics
Gene Regulatory Networks
Aeromonas hydrophila
Carps genetics
Carps microbiology
Carps virology
Carps immunology
MicroRNAs genetics
Transcriptome
RNA, Messenger genetics
RNA, Messenger metabolism
Reoviridae physiology
Subjects
Details
- Language :
- English
- ISSN :
- 1422-0067
- Volume :
- 25
- Issue :
- 12
- Database :
- MEDLINE
- Journal :
- International journal of molecular sciences
- Publication Type :
- Academic Journal
- Accession number :
- 38928143
- Full Text :
- https://doi.org/10.3390/ijms25126438