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Unravelling biochemical and structural features of Bacillus licheniformis GH5 mannanase using site-directed mutagenesis and high-resolution protein crystallography studies.
- Source :
-
International journal of biological macromolecules [Int J Biol Macromol] 2024 Aug; Vol. 274 (Pt 2), pp. 133182. Date of Electronic Publication: 2024 Jun 15. - Publication Year :
- 2024
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Abstract
- Glycoside hydrolase family 5 (GH5) encompasses enzymes with several different activities, including endo-1,4-β-mannosidases. These enzymes are involved in mannan degradation, and have a number of biotechnological applications, such as mannooligosaccharide prebiotics production, stain removal and dyes decolorization, to name a few. Despite the importance of GH5 enzymes, only a few members of subfamily 7 were structurally characterized. In the present work, biochemical and structural characterization of Bacillus licheniformis GH5 mannanase, BlMan5&#95;7 were performed and the enzyme cleavage pattern was analyzed, showing that BlMan5&#95;7 requires at least 5 occupied subsites to perform efficient hydrolysis. Additionally, crystallographic structure at 1.3 Å resolution was determined and mannoheptaose (M7) was docked into the active site to investigate the interactions between substrate and enzyme through molecular dynamic (MD) simulations, revealing the existence of a - 4 subsite, which might explain the generation of mannotetraose (M4) as an enzyme product. Biotechnological application of the enzyme in stain removal was investigated, demonstrating that BlMan5&#95;7 addition to washing solution greatly improves mannan-based stain elimination.<br />Competing Interests: Declaration of competing interest None.<br /> (Copyright © 2024 Elsevier B.V. All rights reserved.)
- Subjects :
- Crystallography, X-Ray
Molecular Dynamics Simulation
Mannosidases chemistry
Mannosidases genetics
Mannosidases metabolism
Substrate Specificity
Hydrolysis
Tetroses chemistry
Tetroses metabolism
Bacterial Proteins chemistry
Bacterial Proteins genetics
Bacterial Proteins metabolism
Protein Conformation
Mannans chemistry
Mannans metabolism
beta-Mannosidase chemistry
beta-Mannosidase genetics
beta-Mannosidase metabolism
Models, Molecular
Molecular Docking Simulation
Oligosaccharides
Bacillus licheniformis enzymology
Bacillus licheniformis genetics
Catalytic Domain
Mutagenesis, Site-Directed
Subjects
Details
- Language :
- English
- ISSN :
- 1879-0003
- Volume :
- 274
- Issue :
- Pt 2
- Database :
- MEDLINE
- Journal :
- International journal of biological macromolecules
- Publication Type :
- Academic Journal
- Accession number :
- 38885857
- Full Text :
- https://doi.org/10.1016/j.ijbiomac.2024.133182