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Paenibacillus hexagrammi sp. nov., a novel bacterium isolated from the gut content of Hexagrammos agrammus .
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2024 Jun; Vol. 74 (6). - Publication Year :
- 2024
-
Abstract
- A Gram-stain-positive, aerobic bacterium, designated as YPD9-1 <superscript>T</superscript> , was isolated from the gut contents of a spotty belly greenling, Hexagrammos agrammus , collected near Dokdo island, South Korea. The rod-shaped cells were oxidase-positive, and catalase-negative. The major cellular fatty acids were anteiso-C <subscript>15 : 0</subscript> , iso-C <subscript>15 : 0</subscript> , C <subscript>16 : 0</subscript> , iso-C <subscript>16 : 0</subscript> and iso-C <subscript>17: 0</subscript> . The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and two unidentified lipids. The DNA G+C content was 47.6 mol% and the predominant respiratory quinone was menaquinone MK-7. The 16S rRNA gene sequence of YPD9-1 <superscript>T</superscript> showed low sequence similarities to species of the genus Paenibacillus , Paenibacillus pocheonensis Gsoil 1138 <superscript>T</superscript> (97.21 % of sequence similarity), Paenibacillus aestuarii CJ25 <superscript>T</superscript> (97.12 %) and Paenibacillus allorhizoplanae JJ-42 <superscript>T</superscript> (96.89 %). The results of phylogenetic analysis based on 16S rRNA gene sequences indicated that YPD9-1 <superscript>T</superscript> formed a distinct branch among other species of the genus Paenibacillus . The digital DNA-DNA hybridisation, average nucleotide identity, and average amino acid identity values between YPD9-1 <superscript>T</superscript> and the related species were in the ranges of 15.3-16.2 %, 74.1-78.4 %, and 71.1-71.9 %, respectively, which are below the species cutoff values. On the basis of the results of the polyphasic analysis, we conclude that strain YPD9-1 <superscript>T</superscript> represents a novel species of the genus Paenibacillus , for which the name Paenibacillus hexagrammi sp. nov. is proposed. The type strain of Paenibacillus hexagrammi is YPD9-1 <superscript>T</superscript> (=KCTC 43424 <superscript>T</superscript> =LMG 32988 <superscript>T</superscript> ).
- Subjects :
- Republic of Korea
Animals
Nucleic Acid Hybridization
Phospholipids analysis
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Base Composition
Phylogeny
DNA, Bacterial genetics
Fatty Acids analysis
Fatty Acids chemistry
Paenibacillus isolation & purification
Paenibacillus classification
Paenibacillus genetics
Bacterial Typing Techniques
Sequence Analysis, DNA
Vitamin K 2 analogs & derivatives
Vitamin K 2 analysis
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 74
- Issue :
- 6
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 38869487
- Full Text :
- https://doi.org/10.1099/ijsem.0.006419