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Genome-wide identification and analysis of ascorbate peroxidase (APX) gene family in hemp ( Cannabis sativa L.) under various abiotic stresses.
- Source :
-
PeerJ [PeerJ] 2024 Apr 26; Vol. 12, pp. e17249. Date of Electronic Publication: 2024 Apr 26 (Print Publication: 2024). - Publication Year :
- 2024
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Abstract
- Ascorbate peroxidase (APX) plays a critical role in molecular mechanisms such as plant development and defense against abiotic stresses. As an important economic crop, hemp ( Cannabis sativa L.) is vulnerable to adverse environmental conditions, such as drought, cold, salt, and oxidative stress, which lead to a decline in yield and quality. Although APX genes have been characterized in a variety of plants, members of the APX gene family in hemp have not been completely identified. In this study, we (1) identified eight members of the CsAPX gene family in hemp and mapped their locations on the chromosomes using bioinformatics analysis; (2) examined the physicochemical characteristics of the proteins encoded by these CsAPX gene family members; (3) investigated their intraspecific collinearity, gene structure, conserved domains, conserved motifs, and cis-acting elements; (4) constructed a phylogenetic tree and analyzed interspecific collinearity; and (5) ascertained expression differences in leaf tissue subjected to cold, drought, salt, and oxidative stresses using quantitative real-time-PCR (qRT-PCR). Under all four stresses, CsAPX6 , CsAPX7 , and CsAPX8 consistently exhibited significant upregulation, whereas CsAPX2 displayed notably higher expression levels under drought stress than under the other stresses. Taken together, the results of this study provide basic genomic information on the expression of the APX gene family and pave the way for studying the role of APX genes in abiotic stress.<br />Competing Interests: The authors declare there are no competing interests.<br /> (©2024 Liang et al.)
- Subjects :
- Multigene Family genetics
Droughts
Plant Proteins genetics
Plant Proteins metabolism
Oxidative Stress genetics
Chromosome Mapping
Genome, Plant genetics
Chromosomes, Plant genetics
Cannabis genetics
Cannabis enzymology
Cannabis metabolism
Ascorbate Peroxidases genetics
Ascorbate Peroxidases metabolism
Stress, Physiological genetics
Phylogeny
Gene Expression Regulation, Plant
Subjects
Details
- Language :
- English
- ISSN :
- 2167-8359
- Volume :
- 12
- Database :
- MEDLINE
- Journal :
- PeerJ
- Publication Type :
- Academic Journal
- Accession number :
- 38685943
- Full Text :
- https://doi.org/10.7717/peerj.17249