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On the engineering of reductase-based-monooxygenase activity in CYP450 peroxygenases.

Authors :
Yadav S
Shaik S
Dubey KD
Source :
Chemical science [Chem Sci] 2024 Mar 07; Vol. 15 (14), pp. 5174-5186. Date of Electronic Publication: 2024 Mar 07 (Print Publication: 2024).
Publication Year :
2024

Abstract

Recent bioengineering of CYP450 <subscript>OleT</subscript> shows that peroxide-based CYP450 <subscript>OleT</subscript> can be converted to a reductase-based self-sufficient enzyme, which is capable of showing efficient hydroxylation and decarboxylation activity for a wide range of substrates. The so-generated enzyme creates several mechanistic puzzles: (A) as CYP450 peroxygenases lack the conventional acid-alcohol pair, what is the source of two protons that are required to create the ultimate oxidant Cpd I? (B) Why is it only CYP450 <subscript>OleT</subscript> that shows the reductase-based activity but no other CYP members? The present study provides a mechanistic solution to these puzzles using comprehensive MD simulations and hybrid QM/MM calculations. We show that the fusion of the reductase domain to the heme-binding domain triggers significant conformational rearrangement, which is gated by the propionate side chain, which constitutes a new water aqueduct via the carboxylate end of the substrate that ultimately participates in Cpd I formation. Importantly, such well-synchronized choreographies are controlled by remotely located Tyr359, which senses the fusion of reductase and communicates to the heme domain via non-covalent interactions. These findings provide crucial insights and a broader perspective which enables us to make a verifiable prediction: thus, the catalytic activity is not only limited to the first or second catalytic shell of an enzyme. Furthermore, it is predicted that reinstatement of tyrosine at a similar position in other members of CYP450 peroxygenases can convert these enzymes to reductase-based monooxygenases.<br />Competing Interests: There are no conflicts to declare.<br /> (This journal is © The Royal Society of Chemistry.)

Details

Language :
English
ISSN :
2041-6520
Volume :
15
Issue :
14
Database :
MEDLINE
Journal :
Chemical science
Publication Type :
Academic Journal
Accession number :
38577361
Full Text :
https://doi.org/10.1039/d3sc06538c