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The ergodicity question when imaging DNA conformation using liquid cell electron microscopy.

Authors :
Li JY
Liu F
Xu J
Kim YJ
Kwon OH
Xia B
Wang H
Granick S
Source :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Jan 16; Vol. 121 (3), pp. e2314797121. Date of Electronic Publication: 2024 Jan 09.
Publication Year :
2024

Abstract

Assessing the ergodicity of graphene liquid cell electron microscope measurements, we report that loop states of circular DNA interconvert reversibly and that loop numbers follow the Boltzmann distribution expected for this molecule in bulk solution, provided that the electron dose is low (80-keV electron energy and electron dose rate 1-20 e <superscript>-</superscript> Å <superscript>-2</superscript> s <superscript>-1</superscript> ). This imaging technique appears to act as a "slow motion" camera that reveals equilibrated distributions by imaging the time average of a few molecules without the need to image a spatial ensemble.<br />Competing Interests: Competing interests statement:The authors declare no competing interest.

Details

Language :
English
ISSN :
1091-6490
Volume :
121
Issue :
3
Database :
MEDLINE
Journal :
Proceedings of the National Academy of Sciences of the United States of America
Publication Type :
Academic Journal
Accession number :
38194452
Full Text :
https://doi.org/10.1073/pnas.2314797121