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Use of DeTerm for Automated Drosophila Dendrite Arbor Terminal Counts.

Authors :
Kimura M
Tann JY
Wilkes OR
Xu F
Skibbe H
Moore AW
Source :
Cold Spring Harbor protocols [Cold Spring Harb Protoc] 2024 Dec 02; Vol. 2024 (12), pp. pdb.prot108151. Date of Electronic Publication: 2024 Dec 02.
Publication Year :
2024

Abstract

Neurons have a complex dendritic architecture that governs information flow through a circuit. Manual quantification of dendritic arbor morphometrics is time-consuming and can be inaccurate. Automated quantification systems such as DeTerm help to overcome these limitations. DeTerm is a software tool that automatically recognizes dendrite branch terminals with high precision. It uses an artificial neural network to label the terminals, count them, and provide each terminal's positional data. DeTerm can recognize the dendritic terminals of Drosophila dendritic arborization (da) neurons, and it can also examine other types of neurons, including mouse Purkinje cells. It is freely available and works on Mac, Windows, and Linux. Here, we describe the use of DeTerm.<br /> (© 2024 Cold Spring Harbor Laboratory Press.)

Details

Language :
English
ISSN :
1559-6095
Volume :
2024
Issue :
12
Database :
MEDLINE
Journal :
Cold Spring Harbor protocols
Publication Type :
Academic Journal
Accession number :
38148169
Full Text :
https://doi.org/10.1101/pdb.prot108151