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Performance and profiling data of plane-wave calculations in quantum ESPRESSO simulation on three supercomputing centres.

Authors :
Marurngsith W
Waiphinit S
Rosmode W
Bavontaweepanya R
Fan J
Source :
Data in brief [Data Brief] 2023 Sep 28; Vol. 50, pp. 109614. Date of Electronic Publication: 2023 Sep 28 (Print Publication: 2023).
Publication Year :
2023

Abstract

This dataset reflects the parallel execution profiles of five Quantum ESPRESSO simulation (QE) versions in finding the total energy of the Cerium Oxide lattice using the self-consistent field (SCF) method. The data analysis used a strong scale setting to identify the optimal parameters and computing resources needed to complete a single SCF loop for one specific material efficiently. This analysis notably contributed to achieving the Best Performance Award at the 5th APAC HPC-AI Competition. The data comprises three sets. The first set features the parallel execution traces captured via the Extrae performance profiling tool, offering a broad view of the QE's model execution behaviour and how it used computational resources. The second set records how long QE's model ran on a single node at three HPC centres: ThaiSC TARA in Thailand, NSCC ASPIRE-1 in Singapore, and NCI Gadi in Australia. This set focuses on the impact of adjusting three parameters for K-point parallelisation. The final set presents benchmarking data generated by scaling out the QE's model across 32 nodes (1,536 CPU cores) on the NCI Gadi supercomputer. Despite its focus on a single material, the dataset serves as a roadmap for researchers to estimate required computational resources and understand scalability bottlenecks, offering general guidelines adaptable across different HPC systems.<br />Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.<br /> (© 2023 The Author(s).)

Details

Language :
English
ISSN :
2352-3409
Volume :
50
Database :
MEDLINE
Journal :
Data in brief
Publication Type :
Academic Journal
Accession number :
37823065
Full Text :
https://doi.org/10.1016/j.dib.2023.109614