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Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae.

Authors :
Leung W
Torosin N
Cao W
Reed LK
Arrigo C
Elgin SCR
Ellison CE
Source :
G3 (Bethesda, Md.) [G3 (Bethesda)] 2023 Sep 30; Vol. 13 (10).
Publication Year :
2023

Abstract

Flow cytometry estimates of genome sizes among species of Drosophila show a 3-fold variation, ranging from ∼127 Mb in Drosophila mercatorum to ∼400 Mb in Drosophila cyrtoloma. However, the assembled portion of the Muller F element (orthologous to the fourth chromosome in Drosophila melanogaster) shows a nearly 14-fold variation in size, ranging from ∼1.3 Mb to >18 Mb. Here, we present chromosome-level long-read genome assemblies for 4 Drosophila species with expanded F elements ranging in size from 2.3 to 20.5 Mb. Each Muller element is present as a single scaffold in each assembly. These assemblies will enable new insights into the evolutionary causes and consequences of chromosome size expansion.<br />Competing Interests: Conflicts of interest The authors declare no conflict of interest.<br /> (© The Author(s) 2023. Published by Oxford University Press on behalf of The Genetics Society of America.)

Details

Language :
English
ISSN :
2160-1836
Volume :
13
Issue :
10
Database :
MEDLINE
Journal :
G3 (Bethesda, Md.)
Publication Type :
Academic Journal
Accession number :
37611223
Full Text :
https://doi.org/10.1093/g3journal/jkad191