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KOunt: a reproducible KEGG orthologue abundance workflow.
- Source :
-
Bioinformatics (Oxford, England) [Bioinformatics] 2023 Aug 01; Vol. 39 (8). - Publication Year :
- 2023
-
Abstract
- Summary: Accurate gene prediction is essential for successful metagenome analysis. We present KOunt, a Snakemake pipeline, that precisely quantifies KEGG orthologue abundance.<br />Availability and Implementation: KOunt is available on GitHub: https://github.com/WatsonLab/KOunt. The KOunt reference database is available on figshare: https://doi.org/10.6084/m9.figshare.21269715. Test data are available at https://doi.org/10.6084/m9.figshare.22250152 and version 1.2.0 of KOunt at https://doi.org/10.6084/m9.figshare.23607834.<br /> (© The Author(s) 2023. Published by Oxford University Press.)
- Subjects :
- Workflow
Databases, Factual
Software
Metagenome
Subjects
Details
- Language :
- English
- ISSN :
- 1367-4811
- Volume :
- 39
- Issue :
- 8
- Database :
- MEDLINE
- Journal :
- Bioinformatics (Oxford, England)
- Publication Type :
- Academic Journal
- Accession number :
- 37535671
- Full Text :
- https://doi.org/10.1093/bioinformatics/btad483