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In silico and in vitro investigation of dual targeting Prima-1 MET as precision therapeutic against lungs cancer.
- Source :
-
Journal of biomolecular structure & dynamics [J Biomol Struct Dyn] 2024 May; Vol. 42 (8), pp. 4169-4184. Date of Electronic Publication: 2023 Jun 05. - Publication Year :
- 2024
-
Abstract
- This study emphasizes the explorations of binding of Prima-1 <superscript>MET</superscript> with two targets, p53 a tumor suppressor protein, and tyrosine kinase of epidermal growth factor receptor. In silico investigations reveal that Prima-1 <superscript>MET</superscript> showed robust binding with both targets. Molecular docking simulations demonstrated the binding affinity of Prima-1 <superscript>MET</superscript> with p53 and tyrosine kinase was found to be -38.601 kJ/mol and -38.976 kJ/mol. In addition, the stability of Prima-1 <superscript>MET</superscript> was explored by molecular dynamics simulation. Prima-1 <superscript>MET</superscript> attains stability in the binding site of the respective protein till the simulation period is over. Moreover, the free binding energy Δ G <subscript>bind</subscript> was calculated by the molecular mechanics Poisson Boltzmann surface area method. The Δ G <subscript>bind</subscript> of Prima-1 <superscript>MET</superscript> with tyrosine kinase was found to be -58.585 ± 0.327 kJ/mol and with p53 it was -35.910 ± 0.335 kJ/mol. Next, cytotoxicity of the Prima-1 <superscript>MET</superscript> was evaluated using multiple cancer cell lines and the IC <subscript>50</subscript> value were ranging between 4.5 and 30 μM. The cell death was identified by apoptosis assay. Further, the p53 and tyrosine kinase expression was monitored using immunofluorescence techniques, it was found Prima-1 <superscript>MET</superscript> induces the expression of p53 protein and mimics the level of tyrosine kinase oncogenic target. Also, reactive oxygen species (ROS) and membrane potential activity of Prima-1 <superscript>MET</superscript> was evaluated by using a lung cancer cell line. A significant decrease in intracellular ROS was observed and resulted in disruption of mitochondrial transmembrane potential. This study uncovers the underlying mechanism of Prima-1 <superscript>MET</superscript> and could be helpful to design further leads against lung cancers.Communicated by Ramaswamy H. Sarma.
- Subjects :
- Humans
Antineoplastic Agents pharmacology
Antineoplastic Agents chemistry
Apoptosis drug effects
Binding Sites
Cell Line, Tumor
Computer Simulation
ErbB Receptors metabolism
ErbB Receptors chemistry
ErbB Receptors antagonists & inhibitors
Protein Binding
Reactive Oxygen Species metabolism
Thermodynamics
Lung Neoplasms drug therapy
Lung Neoplasms pathology
Lung Neoplasms metabolism
Molecular Docking Simulation
Molecular Dynamics Simulation
Tumor Suppressor Protein p53 drug effects
Tumor Suppressor Protein p53 metabolism
Quinuclidines chemistry
Quinuclidines pharmacology
Subjects
Details
- Language :
- English
- ISSN :
- 1538-0254
- Volume :
- 42
- Issue :
- 8
- Database :
- MEDLINE
- Journal :
- Journal of biomolecular structure & dynamics
- Publication Type :
- Academic Journal
- Accession number :
- 37272907
- Full Text :
- https://doi.org/10.1080/07391102.2023.2219323