Genomic characterization of a multidrug-resistant Salmonella Rissen ST469 carrying bla CTX-M-55 gene and Tn6777 isolated from a paediatric patient in China.

Objectives: Here we report a complete genome sequence of a multidrug-resistant Salmonella Rissen, carrying bla _CTX-M-55 and Tn6777, isolated from a Chinese paediatric patient.
Methods: Whole genome of S. Rissen S1905 was sequenced using the Oxford Nanopore MinION and Illumina NovaSeq 6000 platforms. Unicycler was used to perform a de novo assembly of Illumina and Nanopore reads. The genome sequence was annotated using the NCBI Prokaryotic Genome Annotation Pipeline. In silico multilocus sequence typing, plasmid replicons, antimicrobial resistance genes and virulence factors were identified from the genome sequence by multiple bioinformatics tools. Core genome multilocus sequence typing analysis between S. Rissen S1905 and all retrieved from the NCBI GenBank database was performed using BacWGSTdb 2.0 server.
Results: Six contigs totaling 5 056 896 bp make up the complete genome sequence of S. Rissen S1905, which includes 1 chromosome and 5 plasmids. The bla _CTX-M-55 was embedded in the ISEcp1-bla _CTX-M-55 -wbuC transposition unit located in an 85 991-bp IncI1 plasmid. However, the pco-sil operon and other eight antimicrobial resistance genes were carried by Tn6777 in the chromosome. There are 162 virulence genes in S1905. S. Rissen S1905 belongs to ST469; the closest relative was another isolate originating from a human faecal specimen in Shanghai, China, which differed by 60 core genome multilocus sequence type alleles.
Conclusion: These data on the multidrug-resistant S. Rissen carrying bla _CTX-M-55 and Tn6777 can provide a foundation for further studies on the molecular epidemiological characteristics, pathogenicity, antimicrobial resistance mechanisms, and dissemination mechanism of Salmonella.
Competing Interests: Competing interests None declared.
(Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)