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The IPDGC/GP2 Hackathon - an open science event for training in data science, genomics, and collaboration using Parkinson's disease data.

Authors :
Leonard HL
Murtadha R
Martinez-Carrasco A
Jama A
Müller-Nedebock AC
Gil-Martinez AL
Illarionova A
Moore A
Bustos BI
Jadhav B
Huxford B
Storm C
Towns C
Vitale D
Chetty D
Yu E
Grenn FP
Salazar G
Rateau G
Iwaki H
Elsayed I
Foote IF
Jansen van Rensburg Z
Kim JJ
Yuan J
Lake J
Brolin K
Senkevich K
Wu L
Tan MMX
Periñán MT
Makarious MB
Ta M
Pillay NS
Betancor OL
Reyes-Pérez PR
Alvarez Jerez P
Saini P
Al-Ouran R
Sivakumar R
Real R
Reynolds RH
Hu R
Abrahams S
Rao SC
Antar T
Leal TP
Iankova V
Scotton WJ
Song Y
Singleton A
Nalls MA
Dey S
Bandres-Ciga S
Blauwendraat C
Noyce AJ
Source :
NPJ Parkinson's disease [NPJ Parkinsons Dis] 2023 Mar 04; Vol. 9 (1), pp. 33. Date of Electronic Publication: 2023 Mar 04.
Publication Year :
2023

Abstract

Open science and collaboration are necessary to facilitate the advancement of Parkinson's disease (PD) research. Hackathons are collaborative events that bring together people with different skill sets and backgrounds to generate resources and creative solutions to problems. These events can be used as training and networking opportunities, thus we coordinated a virtual 3-day hackathon event, during which 49 early-career scientists from 12 countries built tools and pipelines with a focus on PD. Resources were created with the goal of helping scientists accelerate their own research by having access to the necessary code and tools. Each team was allocated one of nine different projects, each with a different goal. These included developing post-genome-wide association studies (GWAS) analysis pipelines, downstream analysis of genetic variation pipelines, and various visualization tools. Hackathons are a valuable approach to inspire creative thinking, supplement training in data science, and foster collaborative scientific relationships, which are foundational practices for early-career researchers. The resources generated can be used to accelerate research on the genetics of PD.<br /> (© 2023. The Author(s).)

Details

Language :
English
ISSN :
2373-8057
Volume :
9
Issue :
1
Database :
MEDLINE
Journal :
NPJ Parkinson's disease
Publication Type :
Academic Journal
Accession number :
36871034
Full Text :
https://doi.org/10.1038/s41531-023-00472-6